Past Event Archive
PBRC Group Meetings
PBRC group meetings are held on Mondays at 3 p.m. in the PBRC meeting area.
2011
| Date | Topic | Speaker |
|---|---|---|
| 7 February 2011 | Image segmentation and signal enhancement | Jinhai Cai |
| 21 February 2011 | A comparative evaluation of level set algorithms with applications for the segmentation of narrow-leaf plant images | Mahmood Golzarian |
| 7 March 2011 | Vision based robot navigation in indoor environments using clustering techniques | Zeinab Hajiabolhasani |
| 5 September 2011 | Don't pass the salt please! | Stuart Roy |
| 17 October 2011 | Research in Multimedia Systems | Ivan Lee |
| 31 October 2011 | Introductory Statistical Analysis | Huwaida Rabie |
| 14 November 2011 | Taking Augmented Reality out of the Laboratory and into the Real World | Christian Sandor |
2010
| Date | Title | Speaker |
|---|---|---|
| 18 January 2010 | Modelling lipid metabolism in the yeast Saccharomyces cerevisiae | Juergen Zanghellini |
| 1 February 2010 | Gene mapping in wheat and barley: A project update | Lam Huynh |
| 1 March 2010 | Parallel implementation of GDLS | Jooyeum Lee |
| 15 March 2010 | Metabolic engineering update | Kuhn Ip |
| 29 March 2010 | miRNA discovery using the Illumina sequencing technology | Andreas Schreiber |
| 12 April 2010 | Accurate estimation of plant biomass from two-dimensional images | Mahmood Golzarian |
| 19 July 2010 | Benchmarking to estimate shoot dry weight | Ross Frick |
| 9 August 2010 | Variable selection methods for selecting single nucleotide polymorphisms associated with disease | Huwaida Rabie |
| 13 December 2010 | Analysis of wheat microRNA sequencing data | Julie Sleep |
2009
| Date | Title | Speaker |
|---|---|---|
| 30 March 2009 | RNA space: the final frontier or: Exploring biological dark matter | Ute Baumann |
| 20 April 2009 | Towards a full genome sequence of wheat and barley | Lam Huynh |
| 4 May 2009 | Phosphoranes as intermediates in the hydride reduction of quaternary phosphonium salts | Neil Donoghue |
| 18 May 2009 | Exploring microRNA and mRNA interactions and their roles in human diseases | Jiuyong Li |
| 25 May 2009 | Compatible and incompatible pollen interactions: Modelling of growth in tubular cells | Otto Schmidt |
| 15 June 2009 | Chem-informatics & bio-informatics: Computational & statistical drug design | Irene Hudson |
| 29 June 2009 | Structural biology in the Australian Centre for Plant Functional Genomics | Maria Hrmova |
| 24 August 2009 | Nonsmooth optimization approach for clustering | Asef Ganhejlou |
| 26 October 2009 | Modelling leaf development in response to environment | Boris Parent |
| 23 November 2009 | Computer vision system for monitoring crop establishment-segmentation | Mahmood Golzarian |
ACPFG Bioinformatics Meetings
ACPFG bioinformatics meetings are journal club meetings held on Fridays at 10 a.m. in the ACPFG boardroom, unless otherwise specified.
2011
| Date | Topic | Speaker |
|---|---|---|
| 4 February 2011 | Next generation sequencing in non-model organisms: challenges, opportunities, guidelines | Tony Papenfuss (WEHI) |
| 18 February 2011 | Report on BioInfoSummer | Huwaida |
| 4 March 2011 | Report on BioInfoSummer | Jinhai, Mahmood, Julie |
| 1 April 2011 | ICSAP 2011 Conference Report | Jinhai Cai |
| 15 April 2011 | Single Molecule Scaffolds | John Toubia |
| 13 May 2011 | Molecular Markers | Lam Huynh |
| 10 June 2011 | Natural Laws via Symbolic Regression | Elena Kalashyan |
| 26 August 2011 | Report on Winter School | John Toubia |
| 16 September 2011 | Pacific Biosciences sequencing platform | Nathan Watson-Haigh |
| 30 September 2011 | Evidence for Network Evolution in an Arabidopsis Interactome Map | Ute Baumann |
| 14 October 2011 | Calculating transgene copy numbers via Real-Time quantitative PCR | Stephen Fletcher |
| 28 October 2011 | Quantifying the three main components of salinity tolerance in cereals | Huwaida Rabie |
| 15 November 2011 Special time of Tuesday 9:30pm |
Image processing and texture analysis | Mahmood Golzarian |
| 18 November 2011 | Wheat miRNA sequence analysis | Julie Sleep |
| 25 November 2011 | Karsten Oelkers |
2010
| Date | Topic | Leader |
|---|---|---|
| 26 February 2010 | (Next-)next-generation sequencing technologies | John Toubia |
| 12 March 2010 | 3D modelling | Anton van den Hengel |
| 26 March 2010 | (Next-)next-generation sequencing technologies | John Toubia |
| 9 April 2010 | Flux-balance analysis | Desmond Lun |
| 4 June 2010 | Extreme pathway analysis | Juergen Zanghellini |
| 16 July 2010 | Structural sources of robustness in biochemical reaction networks | Andreas Schreiber |
| 30 July 2010 | Gene duplication | Lam Huynh |
| 20 August 2010 | Conference report | John Toubia |
| 3 September 2010 | Metabolomics | Kuhn Ip |
| 17 September 2010 |
Image segmentation Location: Seminar room |
Mahmood Golzarian |
| 1 October 2010 | Genetic algorithm for inverse problems | Elena Kalashyan |
| 18 October 2010 Monday 3:00pm |
Proteomics Location: Bioinformatics Meeting Area, UniSA Mawson Lakes Campus |
Ute Baumann |
| 1 November 2010 Monday 3:00pm |
Proteomics (cont.) Location: Bioinformatics Meeting Area, UniSA Mawson Lakes Campus |
Ute Baumann |
| 12 November 2010 | Conference report | Juergen Zanghellini |
| 26 November 2010 | Modeling of spatial variation in experiments | Huwaida Rabie |
| 10 December 2010 | Alignment-free sequence comparisons | Andreas Schreiber |
2009
| Date | Topic | Leader |
|---|---|---|
| 27 March 2009 | Biological networks | Andreas Schreiber |
| 3 April 2009 | Biological networks Location: Seminar room |
Andreas Schreiber |
| 17 April 2009 | Translation engineering | Kuhn Ip |
| 1 May 2009 | Plant phenomics | Desmond Lun |
| 8 May 2009 | Programming databases Location: Seminar room |
Elena Kalashyan |
| 22 May 2009 | QTL mapping | Lam Huynh |
| 5 June 2009 | Analysis of genomic rearrangements | Andreas Schreiber |
| 19 June 2009 | Computational marker discovery and visualisation in cereals | Chris Duran |
| Short read assembly for dummies | Michael Imelfort | |
| 14 August 2009 | Plant modelling Location: AGRF meeting room |
Desmond Lun |
| 28 August 2009 | ISMB | Ute Baumann |
| 11 September 2009 | ISMB | Ute Baumann |
| 4 December 2009 | Recognition and modelling of spatiotemporal development patterns using computational intelligence and machine learning | Udo Seiffert |
PBRC Kickoff Meeting
Thursday, 22 January 2009
Location: Lecture Room 5, Charles Hawker Conference Centre, University of Adelaide, Waite Campus (map ref. D2).
| Time | Event | Speaker |
|---|---|---|
| 9:50 a.m.-10:00 a.m. | Welcome |
Desmond Lun UniSA / ACPFG |
| 10:00 a.m.-10:30 a.m. | Bioinformatics and abiotic stress tolerance | Peter Langridge ACPFG |
| 10:30 a.m.-11:00 a.m. | Metabolomics: a tool to measure the metabolic phenotype of a biological system | Ute Roessner ACPFG |
| 11:00 a.m.-11:30 a.m. | Break | |
| 11:30 a.m.-12:00 p.m. | Anomaly detection in high-dimensional data sets |
Belinda Chiera UniSA |
| 12:00 p.m.-12:30 p.m. | Modelling the evolution of gene duplications | Andreas Schreiber ACPFG |
| 12:30 p.m.-1:30 p.m. | Lunch | |
| 1:30 p.m.-2:00 p.m. | The Plant Accelerator | Mark Tester ACPFG |
| 2:00 p.m.-2:30 p.m. | Analysis of transgenic plants | Nataliya Kovalchuk ACPFG |
| 2:30 p.m.-3:00 p.m. | Break | |
| 3:00 p.m.-3:30 p.m. | Bioinformatics and hidden Markov models: an introduction |
John van der Hoek UniSA |
| 3:30 p.m.-4:00 p.m. | Research in chem-, wood- & bio-informatics; genomics & environ- & psycho-metrics |
Irene Hudson and
Chris Brien UniSA |
| 4:00 p.m.-4:30 p.m. | Innovative methods for time series modelling of climate variables |
John Boland UniSA |
Friday, 23 January 2009
Location: Lecture Room 4, Charles Hawker Conference Centre, University of Adelaide, Waite Campus (map ref. D2).
| Time | Event | Speaker |
|---|---|---|
| 9:00 a.m.-9:30 a.m. | Phenomics and computational biology in the mechanisms and regulation of plant cell wall biology | Geoff Fincher ACPFG |
| 9:30 a.m.-10:00 a.m. | Between greenhouse and computer: small scale phenomics using the LemnaTec Scanalyzer | Bettina Berger and Karthika Rajendran ACPFG |
| 10:00 a.m.-10:30 a.m. | The biosynthesis and role of cellulose in plant tissues | Rachel Burton ACPFG |
| 10:30 a.m.-11:00 a.m. | Break | |
| 11:00 a.m.-11:30 a.m. | Bioinformatics at UQ | Dave Edwards ACPFG |
| 11:30 a.m.-12:00 p.m. | Theoretical modelling and simulation of colloidal and biological systems |
Stan Miklavcic UniSA |
| 12:00 p.m.-12:30 p.m. | TBA | Ute Baumann ACPFG |
| 12:30 p.m.-1:30 p.m. | Lunch | |
| 1:30 p.m.-2:00 p.m. | ACPFG proteomics capability: analytical & bioinformatic | Andrew Cassin ACPFG |
| 2:00 p.m.-2:30 p.m. | Design and analysis of experiments |
Chris Brien UniSA |
| 2:30 p.m.-3:00 p.m. | Making fuel- and drug-producing microbes through analysis, modelling, and design |
Desmond Lun UniSA / ACPFG |